rs27604454 SNP Detail

Summary

• ID
  rs27604454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135836233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAAGGG TCTTCTTGAT
  GGCCCCCAGG TGCAGCAGGA ACGGAATAGC CTGGACCCAT GATAACAAAG GCCAGGGCTT
  ACCTCTACTT CAAGGCTGAC TTCTGATGGT AGCACTCAGA AGCCAGAAAC AGGAGTAGCT
  GGCTAGAAAA GCTGAGGTCT TTGAGGGTCA TGGGAGACGA GATGGTGGAG TGGACATGCA
  R
  AGGCAGAGGA GGCAGAGGCA GAGGCAGAGG CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG
  CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG CAGAGGCAGA GGCAGAGGCA GGTGGCTCTC
  TGAGTTCCAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCATGG CTACACAGAG
  AAACCCTGTT TCAAACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37777788	NES09148328	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27604454					SNP	G	G	A	A	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777788	NES09148328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135836233 () rs orientation: forward

Symbol	Name	Function Class
Rr602271	regulatory region 602271	1388 bp distal
Rr602272	regulatory region 602272	1588 bp distal
Rr602273	regulatory region 602273	997 bp proximal