rs27604444 SNP Detail

Summary

• ID
  rs27604444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135838037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCAGCAG CAGAGGTGGG
  CTTGGGCAAT GTGAAAGGCT CGGTTCCCAT GCCCTCTTGG TGACACTGAC AGGGACCAAC
  TGGCACTGGC CCAGTCCCTC CCCCCAAAGA ATGTACACTT GGAAAAGACC AAGGAGGGAG
  ACTGTGATGA CATCAGGCCC CCAGGCACAG TCCTCTCAGC CTGGCTCTGA CTCATCACCC
  R
  CACCTGCACT GGCCTCCGGC ACATACGCTG GAAATAGCTG GGGAGGGACC AGAGACAGCA
  CCTGCACCCT GAGCTGCTGT CCCCACCCTC TCTGCCAGAA AACAGGGATG CTTCCCAGAG
  TCCAGCTCAG CTGAGTCTGC TGGTCTCCTG GAGGCTGAGG GAGTGGAGGC CCCCAGGCCA
  CCAGAAGCTG TCCCAGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777778	NES09148268	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	G	A	A	A	A	G	G	A	G
ss147558591	ENSMUSSNP3816275	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604444					SNP	A	A	G	G	G	G	A	?	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777778	NES09148268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135838037 () rs orientation: forward

Symbol	Name	Function Class
Rr602273	regulatory region 602273	within coordinates
Rr602274	regulatory region 602274	1680 bp proximal