rs27604213 SNP Detail

Summary

• ID
  rs27604213
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141165115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTGCTG GGAATTGAAC
  TCAGGACCTC TCGAAGAACA GTCAATTCTC TTAACCACTG AGCTATCTCT CCAGCCCTGA
  TTTTTTTTTT TTTTTTTAAT GGTTGTGAGC CATCATGTGC TTTCTGGGAA TTTGAATTCC
  AGACCTCTGC TCACTCCCGG GTCTACCCAC CTTGCTCCAG ATGGCCCAGT GTTGAGATTC
  W
  AATCCACCGA TTTCTGCATA TAGTGTCCTT TCAGGAGTTA CCATTCATGG TTTCGATTAC
  AGATGGTTAT AAGCCGCCAG GTGTTTGCTG GGAATTGAAT ACAGGATCTC TGGAAGGGCA
  GCAAGCGCTC TTAACCGCTG AGCCATCTCT CCAGCCCTGT TATTACAAGA TGTAGCAGTC
  AGTTTCAATG AGGTGATTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37786150	NES09120967	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27604213					SNP	A	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786150	NES09120967	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141165115 () rs orientation: forward

Symbol	Name	Function Class
Rr603766	regulatory region 603766	1383 bp proximal
Srarp	steroid receptor associated and regulated protein	1699 bp upstream