rs27604203 SNP Detail

Summary

• ID
  rs27604203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141166073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTCAAA TGTATTACCA
  AGGCAGACCT GACCATTGGG AGGATGGAGC AGAAGGCTGA GAACCGTCTA GACAAACACA
  AAATGAAGTC AGAACAAGAT GGCGTTACCT TAGTCATTTC AGATACACGG AAAACATACG
  GTATCTTAGG ACCTGACTGG TGTGAATAGG GACGGGTAAA TTACACTAGT AGTTCTTGCC
  Y
  TTTAAACCAC ATTTAAATCA CTTACTCAAG GTTTAAGTTA TTCTAACAGA TTCTTGAACT
  GGTTTGTTAG AAAAAGCACT CATATTTTGC CAGTGTAAGG CATTAAAAGC AGGACACTTA
  TGACTAAGGA AAGGACACCT GCCAGAGAGT GAATTTACTT CCCTGAGAGA GATTTCAACT
  GACAAGATGA ATTAACACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37786140	NES09120931	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	T	T	T	T	T	T	T	T
ss147737016	ENSMUSSNP4268071	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27604203					SNP	C	C	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786140	NES09120931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141166073 () rs orientation: forward

Symbol	Name	Function Class
Rr603766	regulatory region 603766	425 bp proximal