rs27604200 SNP Detail

Summary

• ID
  rs27604200
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141166346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCACTCA TATTTTGCCA
  GTGTAAGGCA TTAAAAGCAG GACACTTATG ACTAAGGAAA GGACACCTGC CAGAGAGTGA
  ATTTACTTCC CTGAGAGAGA TTTCAACTGA CAAGATGAAT TAACACCCAG GCAGGGGTGA
  ATTCATGGCA CATGTGACCA CCTTGGCCTG GACTGTTTAT GTGTGTCTCC TTGGCCTTCT
  M
  TTTAAACTTT GATCTTACTC CAGGTCCCCA AAGATGAACT CAAGGGGCTT CCTGGATCTC
  TGTCCCACTT CCCAGTGTGA CCCTACTGAA TAAATCTTAC TTTGCTTCCC TCTTTTAATT
  TAGTTCTTTT AATTGGCTTG TTGTGGATGT GTGGACAGAC CTGGCTTGGC ATAAGTTATG
  TTGACCTCCA AGTCACCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37786137	NES09120935	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C	C	C	C	A	C	C	C	C
ss147737031	ENSMUSSNP2069760	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27604200					SNP	A	A	C	C	C	A	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786137	NES09120935	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141166346 () rs orientation: forward

Symbol	Name	Function Class
Rr603766	regulatory region 603766	152 bp proximal
Rr603767	regulatory region 603767	1791 bp proximal