rs27604197 SNP Detail

Summary

• ID
  rs27604197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141172984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCGTGGAA AGTCCCTTGC
  TGCTGTTAAG TGTCATCACC GGCATCAGCG TTCAGAGCTC AGAGACTCAC GTGGGAGAGA
  GAAACGGGCT TTCCAGATGT CAGTGCGCTG CAGGAAGGGA GCCTGACTTG GGAAACCGTA
  CACAGTTTAG GTGAACCTAG GGAGTCCCCG TGTTTCAGAA AGCTGAGCCG AAAGGTTCCA
  Y
  GGGGGAGTGA GGCAGAAGGA CAAGGGCATC CTAAGTTGAA GGTGTTGTCT GTACGAATGT
  TCAAGCTCCT CTTCCTCCGT CAGAGGTGGG TGGTAAAGTC AGCAGGCTCA GCTGAAGTCT
  TTGGGGATGC TGCAAACCCA GTTCAGCACT TTAACTTTTA GGTTAATGGG AAGGCATTTA
  AGAAGCCGGT TTGTGGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37786134	NES09127654	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27604197					SNP	T	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786134	NES09127654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141172984 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			within coordinates
Gm42337	predicted gene, 42337			Intron
Rr603768	regulatory region 603768			1009 bp distal
Rr603769	regulatory region 603769			within coordinates
Rr603770	regulatory region 603770			547 bp distal
Tssr40079	transcription start site region 40079			959 bp downstream
Tssr44320	transcription start site region 44320			233 bp upstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant