rs27604196 SNP Detail

Summary

• ID
  rs27604196
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141173035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACCTAGG GAGTCCCCGT GTTTCAGAAA GCTGAGCCGA
  AAGGTTCCAC GGGGGAGTGA GGCAGAAGGA CAAGGGCATC CTAAGTTGAA GGTGTTGTCT
  S
  TACGAATGTT CAAGCTCCTC TTCCTCCGTC AGAGGTGGGT GGTAAAGTCA GCAGGCTCAG
  CTGAAGTCTT TGGGGATGCT GCAAACCCAG TTCAGCACTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37786133	NES09127655	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27604196					SNP	C	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786133	NES09127655	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141173035 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			20 bp distal
Gm42337	predicted gene, 42337			Intron
Rr603768	regulatory region 603768			1060 bp distal
Rr603769	regulatory region 603769			11 bp distal
Rr603770	regulatory region 603770			598 bp distal
Tssr40079	transcription start site region 40079			1010 bp downstream
Tssr44320	transcription start site region 44320			284 bp upstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant