rs27604195 SNP Detail

Summary

• ID
  rs27604195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141173041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGAGACT CACGTGGGAG
  AGAGAAACGG GCTTTCCAGA TGTCAGTGCG CTGCAGGAAG GGAGCCTGAC TTGGGAAACC
  GTACACAGTT TAGGTGAACC TAGGGAGTCC CCGTGTTTCA GAAAGCTGAG CCGAAAGGTT
  CCACGGGGGA GTGAGGCAGA AGGACAAGGG CATCCTAAGT TGAAGGTGTT GTCTGTACGA
  R
  TGTTCAAGCT CCTCTTCCTC CGTCAGAGGT GGGTGGTAAA GTCAGCAGGC TCAGCTGAAG
  TCTTTGGGGA TGCTGCAAAC CCAGTTCAGC ACTTTAACTT TTAGGTTAAT GGGAAGGCAT
  TTAAGAAGCC GGTTTGTGGA CCAGAAAGAT CACAGGTTGA GGCAGGCTGA AGAGGCATAA
  AGGAGTGGGC CTGAAATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37786132	NES09127656	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27604195					SNP	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786132	NES09127656	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141173041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			26 bp distal
Gm42337	predicted gene, 42337			Intron
Rr603768	regulatory region 603768			1066 bp distal
Rr603769	regulatory region 603769			17 bp distal
Rr603770	regulatory region 603770			604 bp distal
Tssr40079	transcription start site region 40079			1016 bp downstream
Tssr44320	transcription start site region 44320			290 bp upstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant