rs27603695 SNP Detail

Summary

• ID
  rs27603695
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147950344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACC AGGCCACATC AAACGTGTCA
  Y
  CTCGACGACT GTCCAGTGGG TCCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37806620	NES09110196	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T		T		C
ss147985297	ENSMUSSNP6225696	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			C
ss321415373	CHEV_4_147239996	CHEVERUD	SCREENING_POP	f	SNP								C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27603695					SNP	C	C	T	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806620	NES09110196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147950344 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miip	migration and invasion inhibitory protein			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr604509	regulatory region 604509			531 bp proximal
Rr604510	regulatory region 604510			1647 bp proximal