rs27603693 SNP Detail

Summary

• ID
  rs27603693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147950830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTG GGCATGCGGG CTTCTCACAG
  Y
  AATGTCACTG TCTCTGGGCT GCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37806618	NES09110198	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T		T	C		C
ss147985317	ENSMUSSNP1932301	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			C
ss321415377	CHEV_4_147240482	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27603693					SNP	C	C	T	T	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806618	NES09110198	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147950830 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15282	CpG island 15282			1956 bp proximal
Miip	migration and invasion inhibitory protein			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr604509	regulatory region 604509			45 bp proximal
Rr604510	regulatory region 604510			1161 bp proximal
Rr604511	regulatory region 604511			1691 bp proximal