rs27603692 SNP Detail

Summary

• ID
  rs27603692
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147951004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGAGGGA GGAACCCTGC CACACAGGCC TAGATTAAGA
  TCATCACCCT GCAGCCTCAC CCTGTTTACT TATTATCCTC TCTGCTTCCT TGCCTGCCAA
  R
  AGACGACAAC TCCCACTGGG CCTTCCCTAT GTAATCTAAT TCCTGGGGCC TGTGAGACGT
  CTCAATAGAT AAAGGTGCTT GCTGCCAAGC TTGACGATCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ
ss37806617	NES09110199	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ
rs27603692					SNP	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806617	NES09110199	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147951004 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15282	CpG island 15282			1782 bp proximal
Miip	migration and invasion inhibitory protein			Intron
				Noncoding-Transcript-Variant
Rr604509	regulatory region 604509			within coordinates
Rr604510	regulatory region 604510			987 bp proximal
Rr604511	regulatory region 604511			1517 bp proximal
Rr604512	regulatory region 604512			1926 bp proximal
Tssr44551	transcription start site region 44551			1922 bp downstream