rs27603691 SNP Detail

Summary

• ID
  rs27603691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147953404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT CCGAGGCTTG TAGGACGCAG
  Y
  AGCCGAGTTC TAGGGAAACA AAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37806616	NES09110163	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C		C	C	T	C		T	C	C		C
ss45626641	mCV24933387	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T		C
ss147985388	ENSMUSSNP5889306	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss321415394	CHEV_4_147243056	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27603691					SNP	C	C	T	C	T	C	T	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806616	NES09110163	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147953404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15282	CpG island 15282	within coordinates
Fv1	Friend virus susceptibility 1	32 bp upstream
Miip	migration and invasion inhibitory protein	228 bp upstream
Rr398850	regulatory region 398850	54 bp downstream
Rr604509	regulatory region 604509	1779 bp distal
Rr604510	regulatory region 604510	475 bp distal
Rr604511	regulatory region 604511	862 bp distal
Rr604512	regulatory region 604512	within coordinates
Tssr40232	transcription start site region 40232	122 bp downstream
Tssr40233	transcription start site region 40233	51 bp downstream
Tssr44551	transcription start site region 44551	396 bp upstream
Tssr44552	transcription start site region 44552	325 bp upstream
Tssr44553	transcription start site region 44553	252 bp upstream