rs27602045 SNP Detail

Summary

• ID
  rs27602045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148222332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC CGCTGAGAAC CCTTTTAGCA
  Y
  ATCGGTGGAG GCTTAGTCCT TTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37805468	NES09108249	PERLEGEN	MM_PANEL2	f	SNP		C	C		C	C		C		T
ss45669444	mCV24936492	ABI	CRAMUS_MOUSE	f	SNP	T	C		C
ss147994211	ENSMUSSNP2464300	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321417597	CHEV_4_147511984	CHEVERUD	SCREENING_POP	f	SNP							T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27602045					SNP	T	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805468	NES09108249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148222332 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			1991 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr604600	regulatory region 604600			1762 bp proximal
Rr604601	regulatory region 604601			1817 bp proximal