rs27602042 SNP Detail

Summary

• ID
  rs27602042
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148222696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCACCTT AACTTGTAAC
  TTTCCTTCCC AGCCCCAAAT TACATATTGT CTCTATGGTG AAAATATGCA AATAACATTG
  AAAATGGGGA TTCAAGAAAC AATAAGTTGC CTCATAATGC AATCTCTGTC TTACAGCCAT
  CCATCACACT GATGTAGCTA ACGTGAAAAC CCAGGCACTG TAGAGCCAAA GGCAGAGGTC
  K
  CCAAGGCAGA GGTCTCCAGC TGGTCCCATG TTACCTTAGC CTCCCGCCTA TGCCCTTGTT
  CCATCCCTGA GGAATCTCCC CCACCCCACC TCTACCCTGC ATCAGTAATG AAAACGCTGT
  TCAGGAGCTG GGGGGTGGGG TGGATAAAGG ACTCGGTCAT TCCCCACCCC ACCATGATGA
  AAACTCACTG CCCTAAGGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37805465	NES09108254	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27602042					SNP	T	T	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805465	NES09108254	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148222696 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			1627 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr604600	regulatory region 604600			1398 bp proximal
Rr604601	regulatory region 604601			1453 bp proximal
Rr604602	regulatory region 604602			1753 bp proximal
Rr604603	regulatory region 604603			1966 bp proximal