rs27602041 SNP Detail

Summary

• ID
  rs27602041
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148222965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAATCTC CCCCACCCCA
  CCTCTACCCT GCATCAGTAA TGAAAACGCT GTTCAGGAGC TGGGGGGTGG GGTGGATAAA
  GGACTCGGTC ATTCCCCACC CCACCATGAT GAAAACTCAC TGCCCTAAGG TCTACAAGGC
  AGTGAGCTGC CCAGCCAGCT CTAAGTAGAA AGGGCTCTGT TGAACATGGT GTAATGTGGG
  S
  AAGGTCCCCG AGTCTTGAGA AGGGTTGCTG TGCCCACTGA CGGGTGTATC AATTCCTAAA
  GCCAAACCAG CATTCTACCG GCTTAAGCAC AGGCATGTTA CAGAACGCAG GAGAACTCCA
  CTGGCAGCTC CCATAGTTTC GTGGGCACAC AGGTTCCCTG GGGAGCTTGT TAAAGAGCAG
  AGCCCTGCTG TTAGCCTGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805464	NES09108257	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27602041					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805464	NES09108257	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148222965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			1358 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1776 bp upstream
Rr604600	regulatory region 604600			1129 bp proximal
Rr604601	regulatory region 604601			1184 bp proximal
Rr604602	regulatory region 604602			1484 bp proximal
Rr604603	regulatory region 604603			1697 bp proximal
Rr604604	regulatory region 604604			1745 bp proximal
Tssr40254	transcription start site region 40254			1972 bp upstream