rs27602040 SNP Detail

Summary

• ID
  rs27602040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148223052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA CCAGCATTCT ACCGGCTTAA
  R
  CACAGGCATG TTACAGAACG CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37805463	NES09108259	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A		G	A	G	G		G	A	G	A
ss45676232	mCV24936532	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
ss147994231	ENSMUSSNP2875351	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321417601	CHEV_4_147512704	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27602040					SNP	A	A	G	A	G	A	A	G	G	A	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805463	NES09108259	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148223052 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			1271 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1689 bp upstream
Rr604600	regulatory region 604600			1042 bp proximal
Rr604601	regulatory region 604601			1097 bp proximal
Rr604602	regulatory region 604602			1397 bp proximal
Rr604603	regulatory region 604603			1610 bp proximal
Rr604604	regulatory region 604604			1658 bp proximal
Tssr40254	transcription start site region 40254			1885 bp upstream
Tssr40255	transcription start site region 40255			1916 bp upstream