rs27602039 SNP Detail

Summary

• ID
  rs27602039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148223056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG CATTCTACCG GCTTAAGCAC
  R
  GGCATGTTAC AGAACGCAGG AGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37805462	NES09108261	PERLEGEN	MM_PANEL2	f	SNP		A	A		G	A	G		A	A	G		G
ss45685389	mCV24936533	ABI	CRAMUS_MOUSE	f	SNP	G	A		A
ss147994234	ENSMUSSNP1323070	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321417602	CHEV_4_147512708	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27602039					SNP	G	A	A	A	G	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805462	NES09108261	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148223056 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			1267 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1685 bp upstream
Rr604600	regulatory region 604600			1038 bp proximal
Rr604601	regulatory region 604601			1093 bp proximal
Rr604602	regulatory region 604602			1393 bp proximal
Rr604603	regulatory region 604603			1606 bp proximal
Rr604604	regulatory region 604604			1654 bp proximal
Tssr40254	transcription start site region 40254			1881 bp upstream
Tssr40255	transcription start site region 40255			1912 bp upstream