rs27602038 SNP Detail

Summary

• ID
  rs27602038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148223071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTA AGCACAGGCA TGTTACAGAA
  Y
  GCAGGAGAAC TCCACTGGCA GCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37805461	NES09108262	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	T		C	C	T		C	T	T
ss45655008	mCV24936540	ABI	CRAMUS_MOUSE	f	SNP	T	C				C
ss147994241	ENSMUSSNP2853865	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321417603	CHEV_4_147512723	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27602038					SNP	T	C	T	C	T	C	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805461	NES09108262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148223071 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			1252 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1670 bp upstream
Rr604600	regulatory region 604600			1023 bp proximal
Rr604601	regulatory region 604601			1078 bp proximal
Rr604602	regulatory region 604602			1378 bp proximal
Rr604603	regulatory region 604603			1591 bp proximal
Rr604604	regulatory region 604604			1639 bp proximal
Tssr40254	transcription start site region 40254			1866 bp upstream
Tssr40255	transcription start site region 40255			1897 bp upstream