rs27602037 SNP Detail

Summary

• ID
  rs27602037
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148223396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGTTTA ATAGGGTCCC
  TGGGGACTGA GATGAAGATG TTGGTGGTAG GTCTGCATTT TGAGACCCGC TTTGCTCACA
  TTCCAGGGTA ATCCTCCCTC TGGCCTGCTC CTTATCCCTT CCCATGAGAA GGATATGAAT
  ATGGAATTGA CAGCTTCTGG TGCGGGGAGT GGGGGGTGGG TGTCATACCA CATTGCAGGG
  W
  TGACCTTTAA TGCAACATTT CCTATAGAAA CAGGACAAGA CAACTCTTAC ATCCTTGGAG
  GGCAGAGTCT AAATCAGTGG TTCTCAACCT TCCTAATGCT GCAACCCTTC CACACAGTTC
  CTCATGTGGT GACTCCCAAT CATAAAATTA TTTTCATTGC TACTTCATAA CTGCAATTTC
  ACAACAGTCA GGAATTGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37805460	NES09108225	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	A	A	A	A		A	A	A
ss147994254	ENSMUSSNP374364	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A										T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27602037					SNP	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805460	NES09108225	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148223396 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			927 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1345 bp upstream
Rr604600	regulatory region 604600			698 bp proximal
Rr604601	regulatory region 604601			753 bp proximal
Rr604602	regulatory region 604602			1053 bp proximal
Rr604603	regulatory region 604603			1266 bp proximal
Rr604604	regulatory region 604604			1314 bp proximal
Tssr40254	transcription start site region 40254			1541 bp upstream
Tssr40255	transcription start site region 40255			1572 bp upstream
Tssr40256	transcription start site region 40256			1743 bp upstream
Tssr40257	transcription start site region 40257			1760 bp upstream
Tssr40258	transcription start site region 40258			1832 bp upstream
Tssr40259	transcription start site region 40259			1844 bp upstream
Tssr40260	transcription start site region 40260			1856 bp upstream