TTGTA CATCTATAAA GTTGGGCTGT R AAGGCAATAC TTAGCTCCTA GGGCT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37805457 | NES09108206 | PERLEGEN | MM_PANEL2 | f | SNP | A | G | A | G | A | A | G | A | G | A | G | A | A | A | |||||
ss45666272 | mCV24936811 | ABI | CRAMUS_MOUSE | f | SNP | A | G | G | A | |||||||||||||||
ss147994276 | ENSMUSSNP6887605 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | A | A | ||||||||||||||||
ss321417607 | CHEV_4_147513541 | CHEVERUD | SCREENING_POP | f | SNP | A | A | |||||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
||||
rs27602034 | SNP | A | A | G | A | G | A | A | G | G | A | G | A | A | G | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37805457 | NES09108206 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr4:148223889 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi15292 | CpG island 15292 | 434 bp proximal | ||||||
Mad2l2 | MAD2 mitotic arrest deficient-like 2 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr398855 | regulatory region 398855 | 852 bp upstream | ||||||
Rr604600 | regulatory region 604600 | 205 bp proximal | ||||||
Rr604601 | regulatory region 604601 | 260 bp proximal | ||||||
Rr604602 | regulatory region 604602 | 560 bp proximal | ||||||
Rr604603 | regulatory region 604603 | 773 bp proximal | ||||||
Rr604604 | regulatory region 604604 | 821 bp proximal | ||||||
Tssr40254 | transcription start site region 40254 | 1048 bp upstream | ||||||
Tssr40255 | transcription start site region 40255 | 1079 bp upstream | ||||||
Tssr40256 | transcription start site region 40256 | 1250 bp upstream | ||||||
Tssr40257 | transcription start site region 40257 | 1267 bp upstream | ||||||
Tssr40258 | transcription start site region 40258 | 1339 bp upstream | ||||||
Tssr40259 | transcription start site region 40259 | 1351 bp upstream | ||||||
Tssr40260 | transcription start site region 40260 | 1363 bp upstream | ||||||
Tssr40261 | transcription start site region 40261 | 1546 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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