rs27602030 SNP Detail

Summary

• ID
  rs27602030
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148224773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GAGAAAACAC AGCGATCATA
  M
  GCAGAGGCCA TGGAAATCTC TTGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37805453	NES09108182	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A		C		C		C	A	A
ss45727765	mCV24936837	ABI	CRAMUS_MOUSE	f	SNP	A	C			C		A
ss147994314	ENSMUSSNP2943472	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321417614	CHEV_4_147514425	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27602030					SNP	A	C	C	A	C	C	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805453	NES09108182	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148224773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			within coordinates
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			within coordinates
Rr604600	regulatory region 604600			658 bp distal
Rr604601	regulatory region 604601			124 bp distal
Rr604602	regulatory region 604602			303 bp distal
Rr604603	regulatory region 604603			90 bp distal
Rr604604	regulatory region 604604			within coordinates
Tssr40254	transcription start site region 40254			164 bp upstream
Tssr40255	transcription start site region 40255			195 bp upstream
Tssr40256	transcription start site region 40256			366 bp upstream
Tssr40257	transcription start site region 40257			383 bp upstream
Tssr40258	transcription start site region 40258			455 bp upstream
Tssr40259	transcription start site region 40259			467 bp upstream
Tssr40260	transcription start site region 40260			479 bp upstream
Tssr40261	transcription start site region 40261			662 bp upstream