rs27602026 SNP Detail

Summary

• ID
  rs27602026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148225340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTGCTCA GGGGGCGGGG
  CTTCCCCCGA CCGGGCTGCG TTTCCCGCGT GCGGGGTCGG TTGCCTTGAG TCCCTACAGA
  CACCCTCCAC GCCCTCCCCC AGGCGGCCAA GGATGACCAC CCTCACGCGC CAAGACCTCA
  ACTTTGGCCA AGGTAGGGAT CTGAGCCTGC GGGGGGTGGA GGGAGTGCGA TCCTGGTTGG
  R
  GTCCTGCTCA TCAGCTGTGT CCCCACCACA GTGGTGGCTG ACGTGCTCTC CGAGTTCCTG
  GAGGTGGCCG TGCACCTGAT TCTCTATGTG CGCGAGGTCT ACCCGGTGGG CATCTTCCAG
  AAGCGCAAGA AGTACAACGT GCCGGTTCAG GTGAGCCCCG GTGCCCGGCT GGATTTAAAA
  ACCTTTATTC TACTTGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37805449	NES09108186	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G		A	A	G	A
ss321417617	CHEV_4_147514992	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27602026					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805449	NES09108186	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148225340 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			within coordinates
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			298 bp downstream
Rr604600	regulatory region 604600			1225 bp distal
Rr604601	regulatory region 604601			691 bp distal
Rr604602	regulatory region 604602			870 bp distal
Rr604603	regulatory region 604603			657 bp distal
Rr604604	regulatory region 604604			130 bp distal
Tssr40254	transcription start site region 40254			376 bp downstream
Tssr40255	transcription start site region 40255			331 bp downstream
Tssr40256	transcription start site region 40256			185 bp downstream
Tssr40257	transcription start site region 40257			116 bp downstream
Tssr40258	transcription start site region 40258			109 bp downstream
Tssr40259	transcription start site region 40259			93 bp downstream
Tssr40260	transcription start site region 40260			72 bp downstream
Tssr40261	transcription start site region 40261			95 bp upstream