rs27602025 SNP Detail

Summary

• ID
  rs27602025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148225696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGC ATTTTAAAGG GTTTCTGAGG
  Y
  TTGGATAAAG AGGATTCCCA TTGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37805448	NES09108187	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C	C	C	T	C		T	C	C	C
ss147994327	ENSMUSSNP4388792	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss321417618	CHEV_4_147515348	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27602025					SNP	C	C	T	C	T	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805448	NES09108187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148225696 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			176 bp distal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			654 bp downstream
Rr604600	regulatory region 604600			1581 bp distal
Rr604601	regulatory region 604601			1047 bp distal
Rr604602	regulatory region 604602			1226 bp distal
Rr604603	regulatory region 604603			1013 bp distal
Rr604604	regulatory region 604604			486 bp distal
Tssr40254	transcription start site region 40254			732 bp downstream
Tssr40255	transcription start site region 40255			687 bp downstream
Tssr40256	transcription start site region 40256			541 bp downstream
Tssr40257	transcription start site region 40257			472 bp downstream
Tssr40258	transcription start site region 40258			465 bp downstream
Tssr40259	transcription start site region 40259			449 bp downstream
Tssr40260	transcription start site region 40260			428 bp downstream
Tssr40261	transcription start site region 40261			231 bp downstream