rs27601936 SNP Detail

Summary

• ID
  rs27601936
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135434661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGGCT GAGAAACATG
  ACCTTAAGGG CATCTGACTC AAGGGTTCTC TAGCTCATTC CCAAAGGCCT TTGGGGCTCC
  AGGATCCTCA CTCTTCAATG GGAGTGGCCT CACTCAGCTA ATGCACATGT AGTGGCTTTA
  CATAAAAGGT GTCTTGAAAG GGGTTCACAG CTAACAAAAC CTCAAATCAC TGTCCTTGGT
  M
  CATATCTGTA TTGTTTCAAA CAAACTTGGA TGTCAACTAG CAAGGCTGCC CTAGTGACTT
  CATTTGTGTG TCCCCAAGAG TCCCCAGAGT CACCAATCTG ACAGGAGGTC TTTGCAAGCA
  CCTCTGGGAC ACACACACAC ACACACACAC ACACACACAC CTACCTCTCT GGGGTTTCCC
  TACAATGATG TTTGACCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778960	NES09159962	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601936					SNP	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778960	NES09159962	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135434661 () rs orientation: forward

Symbol	Name	Function Class
Ifnlr1	interferon lambda receptor 1	mRNA-UTR
Rr602109	regulatory region 602109	960 bp distal
Rr602110	regulatory region 602110	1607 bp proximal
Rr602111	regulatory region 602111	1676 bp proximal
Rr602112	regulatory region 602112	1888 bp proximal