rs27601935 SNP Detail

Summary

• ID
  rs27601935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135434666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGAGAA ACATGACCTT
  AAGGGCATCT GACTCAAGGG TTCTCTAGCT CATTCCCAAA GGCCTTTGGG GCTCCAGGAT
  CCTCACTCTT CAATGGGAGT GGCCTCACTC AGCTAATGCA CATGTAGTGG CTTTACATAA
  AAGGTGTCTT GAAAGGGGTT CACAGCTAAC AAAACCTCAA ATCACTGTCC TTGGTACATA
  Y
  CTGTATTGTT TCAAACAAAC TTGGATGTCA ACTAGCAAGG CTGCCCTAGT GACTTCATTT
  GTGTGTCCCC AAGAGTCCCC AGAGTCACCA ATCTGACAGG AGGTCTTTGC AAGCACCTCT
  GGGACACACA CACACACACA CACACACACA CACACCTACC TCTCTGGGGT TTCCCTACAA
  TGATGTTTGA CCACATCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778959	NES09159964	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601935					SNP	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778959	NES09159964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135434666 () rs orientation: forward

Symbol	Name	Function Class
Ifnlr1	interferon lambda receptor 1	mRNA-UTR
Rr602109	regulatory region 602109	965 bp distal
Rr602110	regulatory region 602110	1602 bp proximal
Rr602111	regulatory region 602111	1671 bp proximal
Rr602112	regulatory region 602112	1883 bp proximal