rs27601932 SNP Detail

Summary

• ID
  rs27601932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135436104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGGGCT TGCACACGGA
  ATGCCTTCGG CTTCCACTTC TTATTTTTGA GACAGGGTCT CACTAAGTTG GCCGTGCTGG
  CTTTGAGCTC ACCCTACTGC CCAGGCTGAT CTTGAACTTG TATCTTCCTG CCTCAGCTTC
  CCGAGTCGTT GAGGGACAAG CCTGAACCAC CAGGCCCAGC TTCTTATGCA CATGCTGTTG
  R
  GATCCACATA CTCAGTATGA GAAGAGTGAG TGCCGTGGGT CCTGGTTTTC GGTGCCACCT
  GGGATGGTGA GGCTGGAGCT TGCCCACCAC CCTGGGAGCT CACCCAATGG AGGCAGTGGT
  TCACAGAACG ATGTCTTGGT GCGGCCAGCC TTGCAACCCT AAACTTGCTG CAGTAGCTCT
  CCACTAGGTT GGGTGCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778956	NES09159917	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601932					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778956	NES09159917	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135436104 () rs orientation: forward

Symbol	Name	Function Class
Ifnlr1	interferon lambda receptor 1	612 bp downstream
Rr602110	regulatory region 602110	164 bp proximal
Rr602111	regulatory region 602111	233 bp proximal
Rr602112	regulatory region 602112	445 bp proximal
Rr602113	regulatory region 602113	677 bp proximal
Rr602114	regulatory region 602114	952 bp proximal
Rr602115	regulatory region 602115	1651 bp proximal