rs27601931 SNP Detail

Summary

• ID
  rs27601931
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135436435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTTGGT GCGGCCAGCC
  TTGCAACCCT AAACTTGCTG CAGTAGCTCT CCACTAGGTT GGGTGCCCAG CTTCCTGAGG
  ACAAGTCATG ATTATGTGGC ATGGCACCTG CAGGTGTCAC CGTAGACTGC CGCCGGTCAG
  ACCCCAGACA CAGGCTGAGC AGATCTAAGT CTCTGCACTT CAGTCTTCCC GGCCAGTGAG
  R
  TCAGGTGCTA CAATGCCTTC CCTCCTCTAT ATGGAGTGTG TGCTCCCTAC ATCTCAGTCT
  ACAGCAGGAA CGCAGCCATT GGAGTGAGAA GCCATAATGT GCCTGGTGCC ACAGAGGCCA
  GAAGAGGGCG CCAGATTCTC TGAAACTGGA GCTGTCGTGT GGGTGCTAGT TATCATTTTT
  AACCCAATGG CTTTACAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778955	NES09159919	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss45605184	mCV24480196	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss147549702	ENSMUSSNP3747867	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601931					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778955	NES09159919	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135436435 () rs orientation: forward

Symbol	Name	Function Class
Ifnlr1	interferon lambda receptor 1	943 bp downstream
Rr602110	regulatory region 602110	within coordinates
Rr602111	regulatory region 602111	77 bp distal
Rr602112	regulatory region 602112	114 bp proximal
Rr602113	regulatory region 602113	346 bp proximal
Rr602114	regulatory region 602114	621 bp proximal
Rr602115	regulatory region 602115	1320 bp proximal