rs27601928 SNP Detail

Summary

• ID
  rs27601928
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135436706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGCCATT GGAGTGAGAA
  GCCATAATGT GCCTGGTGCC ACAGAGGCCA GAAGAGGGCG CCAGATTCTC TGAAACTGGA
  GCTGTCGTGT GGGTGCTAGT TATCATTTTT AACCCAATGG CTTTACAATT CACAGGCACA
  GGCAGGGAGC AGTGCAGTCT GTGGGCAGGC TCAGGAGTCT ATGGCCCACT TGACTGTTAC
  K
  CAATGAGACC CTAGAAAGCA GGGTAAACCT TCCTTTTCTG ATTCCCCTCA ACCACTCTGA
  GCTCCTGGGC CTGTGTGCTG CCACCTTCTG GACGGTGGTG GGATGGCGGG ACTGTCAGAG
  AGGCGTCTCA ACCACCCCAT TCAACCCTGC TCTGACAAGA AAGATATTAA ATGGACACTA
  CATCCAGGCT CCAGCACTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37778952	NES09159887	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27601928					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778952	NES09159887	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135436706 () rs orientation: forward

Symbol	Name	Function Class
Ifnlr1	interferon lambda receptor 1	1214 bp downstream
Rr602110	regulatory region 602110	within coordinates
Rr602111	regulatory region 602111	348 bp distal
Rr602112	regulatory region 602112	136 bp distal
Rr602113	regulatory region 602113	75 bp proximal
Rr602114	regulatory region 602114	350 bp proximal
Rr602115	regulatory region 602115	1049 bp proximal