rs27601927 SNP Detail

Summary

• ID
  rs27601927
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135436718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGAAGC CATAATGTGC
  CTGGTGCCAC AGAGGCCAGA AGAGGGCGCC AGATTCTCTG AAACTGGAGC TGTCGTGTGG
  GTGCTAGTTA TCATTTTTAA CCCAATGGCT TTACAATTCA CAGGCACAGG CAGGGAGCAG
  TGCAGTCTGT GGGCAGGCTC AGGAGTCTAT GGCCCACTTG ACTGTTACGC AATGAGACCC
  K
  AGAAAGCAGG GTAAACCTTC CTTTTCTGAT TCCCCTCAAC CACTCTGAGC TCCTGGGCCT
  GTGTGCTGCC ACCTTCTGGA CGGTGGTGGG ATGGCGGGAC TGTCAGAGAG GCGTCTCAAC
  CACCCCATTC AACCCTGCTC TGACAAGAAA GATATTAAAT GGACACTACA TCCAGGCTCC
  AGCACTTGAC CCAGGGTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778951	NES09159888	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601927					SNP	T	T	T	T	G	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778951	NES09159888	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135436718 () rs orientation: forward

Symbol	Name	Function Class
Ifnlr1	interferon lambda receptor 1	1226 bp downstream
Rr602110	regulatory region 602110	within coordinates
Rr602111	regulatory region 602111	360 bp distal
Rr602112	regulatory region 602112	148 bp distal
Rr602113	regulatory region 602113	63 bp proximal
Rr602114	regulatory region 602114	338 bp proximal
Rr602115	regulatory region 602115	1037 bp proximal