rs27601916 SNP Detail

Summary

• ID
  rs27601916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135437487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGATTCTG ATGGCCTACA
  AATAAGCGGC AAAGAAATCC TGTTTGGCAG CACCATCCTG AGAGAGAATC TGTTGGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG CGAGAGAGCA CCAGGCCTAC
  TCCAGGGACC TGAGATTGGG GATTGTCCAT GTTAGACAGC CAAGGCTTCT CCAGAGGGCT
  Y
  AGTCCTATCA GGTGCCTTCC CTAAGTTGCT CATGTCCAAC CCCAAGGTGG GGTAGAACTA
  CAGAATTCAT TCTTGTGTTT ATATTTTATT CCTATCTGGT ACCATCACCA AACTGCTAAA
  CTCAGAGACC CTCCCCTCTC AAACCTATAA AATTATGGAA TACCCTGCAC TCTGTGGGCT
  GCTGTTGAAT TTCCCAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778940	NES09159899	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601916					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778940	NES09159899	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135437487 () rs orientation: forward

Symbol	Name	Function Class
Ifnlr1	interferon lambda receptor 1	1995 bp downstream
Rr602110	regulatory region 602110	296 bp distal
Rr602111	regulatory region 602111	1129 bp distal
Rr602112	regulatory region 602112	917 bp distal
Rr602113	regulatory region 602113	685 bp distal
Rr602114	regulatory region 602114	410 bp distal
Rr602115	regulatory region 602115	268 bp proximal