rs27601733 SNP Detail

Summary

• ID
  rs27601733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135471228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCTGCCT GGTACCACCC
  AAAAGGGGAT TGTCTCGTTC ATCAGAAACC CTTCAGGGTC ATCCATCAGT AGCCAGAGGC
  CACAAGTTCA AACGAGATCG TTTAGCGACC AGAGAGAGGA AGATGGGTGA AGAGTTCAGC
  CTTCCTGGAG CCTTGAGCCA GGCAGCAGCT ATGGATGGGG GTTTGATGTT GCCCTGTGAA
  Y
  ATGTGCCTAG CAACCGAGGC TCCGAAGGAG AGCCCTGTAA ATCTAGAAGC TTTTACAAAG
  CTCATGCCAA GATGAATGTG CCAGTGGACA GGGACCAAGC CAGAGATGAG TGACCAGCAA
  GGGGCCACAG CAGAGCCCAG GCTAGAGAGA GCCCAGGCTA GAGAGAGCAG GTCAGATCAG
  GCAGAGGGTA AAGGAACGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778756	NES09158668	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601733					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778756	NES09158668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135471228 () rs orientation: forward

Symbol	Name	Function Class
Il22ra1	interleukin 22 receptor, alpha 1	Intron
Rr602126	regulatory region 602126	896 bp proximal
Rr602127	regulatory region 602127	1672 bp proximal