rs27601727 SNP Detail

Summary

• ID
  rs27601727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135472512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGAATGT TTAATCACCT
  CTCTCAGCCA ACGCCTGGAT TTTTCTCCTC TTTGTGTAAA CTCTGGCAAA GCAAACATAT
  ATATTACCAA CTCAAGGAGC ATACAGTGGT GGGTGGAGGT ATGGGGGTGA GGATAGAGAG
  GATAAAATGA TCCTCATTGT CTTCAAAGCC AAGGAACCAT ACTGGTGATG ATGAAGGCTC
  R
  TGTTTCTGCC AGGCTGACCA GAGAGCACAC TAGGAGCCAC GACTCCCGCA CAGTCTGGCA
  GGCGGGCACT TCAATCACCT CCATTCAACA GACTGGGGGT ATGGCTCTGT GACAGAGCAC
  AAGCAAGGTT TGGGGTTCCA TTCCCAACAA TGGAAAGCAA AAACTCACAA AAGCCCCCTC
  TCTCAGAGGA GCGTCTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778750	NES09158640	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601727					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778750	NES09158640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135472512 () rs orientation: forward

Symbol	Name	Function Class
Il22ra1	interleukin 22 receptor, alpha 1	Intron
Rr602126	regulatory region 602126	within coordinates
Rr602127	regulatory region 602127	388 bp proximal