rs27601725 SNP Detail

Summary

• ID
  rs27601725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135472865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCAAAA ACTCACAAAA
  GCCCCCTCTC TCAGAGGAGC GTCTGTTCTT TGGTTAGGCT TATGTTCCCA AGCAAGTGAA
  GACTTGTGAC CCTTCAAGCT GTCAGTTAGG GTAGGACGGT GATGTCAGGG GGCAGGGATG
  TCTATGAGGA TAGGGGAGGG GGCACCCAAC CCATCGTGTT CAGGTGACTT CCACCAATCA
  Y
  AGTCTACCTT GGAACTCAGT TTGAGACCTG CACAGCAGTG CATGGTCCTG GGTGGAAAGC
  GGTCCCTGTC CTCAGCTTTA TCCAGAAACT CAGCCCATGC GAGCCCACAA GACACTGGCT
  ACTCTGCCTG AATCCCAGGG CACTCTCTGG CAGGAGGAGA GCCAACCTTG GCCGAAAGCA
  CGAGACATGC CCTGCCCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778748	NES09158642	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601725					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778748	NES09158642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135472865 () rs orientation: forward

Symbol	Name	Function Class
Il22ra1	interleukin 22 receptor, alpha 1	Intron
Rr602126	regulatory region 602126	293 bp distal
Rr602127	regulatory region 602127	35 bp proximal