rs27601719 SNP Detail

Summary

• ID
  rs27601719
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135473588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGCCTCC AGCTTCTGAT
  CCTCCTGTCT CAGCCTCCTA AGGACTGACC TCAGTCTTAG TCTAGGCTTT GCCTCTGCCC
  AGATCCCAGA ACCCTTTGCT TTAATTTCTC AAGGATGCCT GGGAGTTACA GAATATCATC
  CCAGCATCTT GGTGGAGGAA AGGGTTTCAG AGTTGTTTCA CCTCATCTTT TTTTTTTTTT
  W
  ACAACTGAGG AAACAGAGGC ATGATTGTAC AATGTCTGTG GGGATATGCT CTGGGGTGGC
  ACTCATCCAC TGAGGAGCTG TGTGACCTTT GGCAAGTCAC TGAACCTCTC TGGGAGTCAG
  CCTTGTTGCT GGGAAGAGAA GAACATCCCA GTCCCTTTGT GTGTTCTGTG ATTCGCCGGG
  CGAGCCTCAG CATGCAGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss37778742	NES09158597	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs27601719					SNP	A	T	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778742	NES09158597	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135473588 () rs orientation: forward

Symbol	Name	Function Class
Il22ra1	interleukin 22 receptor, alpha 1	Intron
Rr602126	regulatory region 602126	1016 bp distal
Rr602127	regulatory region 602127	278 bp distal