rs27601037 SNP Detail

Summary

• ID
  rs27601037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172068379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGTGGC TAGGACAGTG
  CCAGGCTAAG GACCGATGAG TGGCAACCTG TGGTCCACTA AAAAGCTTAG GGGCTGGAGG
  TCTCATATAG CTTTGTAGTC CAGCCTGGAT GTCCCTTCAG CCTCCGTCAC TCTGGCTAGA
  GACTGCACCT AGGAAGCCAT GTAGAAATAT AAAGAGAAAG GTCACAACTT GAAGCAGGTT
  R
  AGGGGATGTT GCAAACAGGA TTAGGAAGAG ACATGTGGGG GGTTTTTTGG AGGGGTTGTT
  TGTTTGTTTT TTCGAGACAG GGTTTCTCTG TATAGCCCTG GCTGTCCTGG AACTCACTTT
  GTAGACCAGG CTGTCCTGGA ACTCAGAAAC CCGCCTGCCT CTGCCTCCCG AGTGCATTTA
  CATCACTCCC TCTTCCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37809657	NES08707933	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27601037					SNP	A	A	A	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809657	NES08707933	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172068379 () rs orientation: forward

Symbol	Name	Function Class
Rr571621	regulatory region 571621	492 bp proximal
Rr571622	regulatory region 571622	651 bp proximal
Rr571623	regulatory region 571623	1303 bp proximal
Rr571624	regulatory region 571624	1543 bp proximal
Tssr27938	transcription start site region 27938	720 bp upstream