rs27601036 SNP Detail

Summary

• ID
  rs27601036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172068382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGCTAG GACAGTGCCA
  GGCTAAGGAC CGATGAGTGG CAACCTGTGG TCCACTAAAA AGCTTAGGGG CTGGAGGTCT
  CATATAGCTT TGTAGTCCAG CCTGGATGTC CCTTCAGCCT CCGTCACTCT GGCTAGAGAC
  TGCACCTAGG AAGCCATGTA GAAATATAAA GAGAAAGGTC ACAACTTGAA GCAGGTTAAG
  R
  GGATGTTGCA AACAGGATTA GGAAGAGACA TGTGGGGGGT TTTTTGGAGG GGTTGTTTGT
  TTGTTTTTTC GAGACAGGGT TTCTCTGTAT AGCCCTGGCT GTCCTGGAAC TCACTTTGTA
  GACCAGGCTG TCCTGGAACT CAGAAACCCG CCTGCCTCTG CCTCCCGAGT GCATTTACAT
  CACTCCCTCT TCCCCCAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37809656	NES08725415	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601036					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809656	NES08725415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172068382 () rs orientation: forward

Symbol	Name	Function Class
Rr571621	regulatory region 571621	489 bp proximal
Rr571622	regulatory region 571622	648 bp proximal
Rr571623	regulatory region 571623	1300 bp proximal
Rr571624	regulatory region 571624	1540 bp proximal
Tssr27938	transcription start site region 27938	723 bp upstream