rs27601035 SNP Detail

Summary

• ID
  rs27601035
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172068874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTTGTCCC TGGAGGAAAC TGAGCATTTA TAAGAATAAG
  AATAATAGTT TTAAGAGGGA TAGGGTATGT ACAGATGCAC TAAAGTAATC ACTCTGAGAA
  S
  GACATGCACA GTAGAATTAA GGAACAAAGA GATGTCAGCA AGAATAGAAG ACTGTATCCA
  AAATCTGATG AGGACTGGAT GTAACCCAGG CCCGAGGGA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37809655	NES08707896	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	C	G		G	G	G	C		G
ss148311828	ENSMUSSNP5414367	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320617819	CHEV_2_172052454	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27601035					SNP	G	G	G	G	G	G	C	G	C	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809655	NES08707896	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172068874 () rs orientation: forward

Symbol	Name	Function Class
Rr571621	regulatory region 571621	within coordinates
Rr571622	regulatory region 571622	156 bp proximal
Rr571623	regulatory region 571623	808 bp proximal
Rr571624	regulatory region 571624	1048 bp proximal
Tssr27938	transcription start site region 27938	1215 bp upstream