rs27601034 SNP Detail

Summary

• ID
  rs27601034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172068930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTAGGC TGATCACTTG
  ATTAGATAAT CTGTAGGGTT GGGGAACTTG TCCCTGGAGG AAACTGAGCA TTTATAAGAA
  TAAGAATAAT AGTTTTAAGA GGGATAGGGT ATGTACAGAT GCACTAAAGT AATCACTCTG
  AGAACGACAT GCACAGTAGA ATTAAGGAAC AAAGAGATGT CAGCAAGAAT AGAAGACTGT
  R
  TCCAAAATCT GATGAGGACT GGATGTAACC CAGGCCCGAG GGACCAGGGT AAATACCCTG
  CATGCTAATG CTCAGGTCCC TGGGGTTGCA CTTTCTTCAA GATCCACCAG ATGGCAAAAC
  CACACAAGAA ACACCGTCTC TGCCACTCAG GAGCCTGCCT GCTGCCAATC CCATGTGTTC
  ACAGGCAGCA CTCCCTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37809654	NES08707897	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27601034					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809654	NES08707897	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172068930 () rs orientation: forward

Symbol	Name	Function Class
Rr571621	regulatory region 571621	within coordinates
Rr571622	regulatory region 571622	100 bp proximal
Rr571623	regulatory region 571623	752 bp proximal
Rr571624	regulatory region 571624	992 bp proximal
Tssr27938	transcription start site region 27938	1271 bp upstream