rs27601033 SNP Detail

Summary

• ID
  rs27601033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172069234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAGATG GCAAAACCAC
  ACAAGAAACA CCGTCTCTGC CACTCAGGAG CCTGCCTGCT GCCAATCCCA TGTGTTCACA
  GGCAGCACTC CCTGGTGTCA TGGGAGAACC TGAAAGATGA GCTGACTTCA TCTGTCAAAT
  AAAGCATTCC AGTGAAGCGG CAGAACGGAG GATGGAAAGC CCACACAGCG CTGAGGACTG
  R
  CTCGCCTTCC CTAAACATGG TCATTGAGAC AAAAAGGGGA AGATAAGGTA CAGGAGAGAA
  ATCTTCTCAA AATGGTAACC CAGCAATGGC AAGCACATCC TAAGGCAGGC CCCGGGTACC
  ACTGCTGGCA GCATCACTGC TGATAGCAGC AGCATCCTGA AGTCCTTCCA CATCAGGGTG
  AATCATCTGT AGGTATTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37809653	NES08707898	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27601033					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809653	NES08707898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172069234 () rs orientation: forward

Symbol	Name	Function Class
Rr571621	regulatory region 571621	within coordinates
Rr571622	regulatory region 571622	183 bp distal
Rr571623	regulatory region 571623	448 bp proximal
Rr571624	regulatory region 571624	688 bp proximal
Rr571625	regulatory region 571625	1929 bp proximal
Tssr27938	transcription start site region 27938	1575 bp upstream