rs27601031 SNP Detail

Summary

• ID
  rs27601031
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172069565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTGTAATG GACATAAGAG ACAGGTCTTT TAGGCAGCTT
  TGACCTGTGA CCTTTCCCCA TCACAGGCTG CTGCAACCCC AATTGGTGAG ATGAGCAGGA
  M
  ACAGGATCAG GGCTGGAGAG ATGGCTCAGT GGTTAAGAGC ACCAACTGCT CTTCCAAAGG
  TCCTGAGTTC AAATCCCAAC AACCACATGG TGGCTCACAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37809651	NES08707900	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27601031					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809651	NES08707900	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172069565 () rs orientation: forward

Symbol	Name	Function Class
Rr571621	regulatory region 571621	190 bp distal
Rr571622	regulatory region 571622	514 bp distal
Rr571623	regulatory region 571623	117 bp proximal
Rr571624	regulatory region 571624	357 bp proximal
Rr571625	regulatory region 571625	1598 bp proximal
Tssr27938	transcription start site region 27938	1906 bp upstream