rs27601028 SNP Detail

Summary

• ID
  rs27601028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172070535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGCCCACA AACCCAGAAA TGGTTCTCCT GATAAAACAA
  TGCACAAATT ATGGGCCATT TCAATAAAAG TGCGGCTTTC CTTCCTGTGA ACTCTTAGCA
  Y
  AAATGGCTGA GATCACCAGT TGCTAAGCGC TAAGCTCAAA TGCAGCAATG AAAAGGCCAT
  GTTACTGCAT TCGTGAGTGT CCACATAACA CCCTGATGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37809648	NES08707867	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C	C	C	T	C		C	C	C	C		C
ss148311839	ENSMUSSNP1533747	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss320617821	CHEV_2_172054115	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27601028					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809648	NES08707867	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172070535 () rs orientation: forward

Symbol	Name	Function Class
Rr571621	regulatory region 571621	1160 bp distal
Rr571622	regulatory region 571622	1484 bp distal
Rr571623	regulatory region 571623	832 bp distal
Rr571624	regulatory region 571624	592 bp distal
Rr571625	regulatory region 571625	628 bp proximal