rs27601027 SNP Detail

Summary

• ID
  rs27601027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172070570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAATGCAC AAATTATGGG CCATTTCAAT AAAAGTGCGG
  CTTTCCTTCC TGTGAACTCT TAGCATAAAT GGCTGAGATC ACCAGTTGCT AAGCGCTAAG
  Y
  TCAAATGCAG CAATGAAAAG GCCATGTTAC TGCATTCGTG AGTGTCCACA TAACACCCTG
  ATGGCTGGCT TATTACTGAG GTCAAACGGA TACAACCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37809647	NES08707868	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C	T	C	T		T	T	T	C		T
ss148311844	ENSMUSSNP4265837	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss320617822	CHEV_2_172054150	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27601027					SNP	T	T	T	T	T	T	C	T	C	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809647	NES08707868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172070570 () rs orientation: forward

Symbol	Name	Function Class
Rr571621	regulatory region 571621	1195 bp distal
Rr571622	regulatory region 571622	1519 bp distal
Rr571623	regulatory region 571623	867 bp distal
Rr571624	regulatory region 571624	627 bp distal
Rr571625	regulatory region 571625	593 bp proximal