rs27600865 SNP Detail

Summary

• ID
  rs27600865
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172124798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCCCCG CGCCCCCTCC
  CCCGCCCAGC CCCTTCCTTC TTTACTGACA AGTCAATAAC CAATTAGAGA ACTAGTCCTT
  AGTATCAGCA CCTCCCCTTA CAAACTCCTA CAAGTTATTC TCTGATGTCC ACATATACGC
  TATGGCACGT ATGTAGTCAT GTCTGTGTAC ACACACATAC AAACAAACAG ACAGATGATA
  K
  ATGGGTAGAC ATACAATATA CAAAAACTTT GGATTAGTTA TTCGACGTCT GTAAGCCTAA
  ATATCCATGC TGAGCATGGA TTCCTATAGG GACAGTGTGA CTGTGATTCA CTAAATGAAT
  TAAGATGTAC ATGTTTATAT GGAAAGTCCC AGAAGAATAT ACTGAACAGT TGCCATGGTT
  ACTTATGTGT CAAGAGTAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37809484	NES08705393	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27600865					SNP	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809484	NES08705393	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172124798 () rs orientation: forward

Symbol	Name	Function Class
Gm74903	predicted gene, 74903	281 bp upstream
Rr571639	regulatory region 571639	292 bp distal
Rr571640	regulatory region 571640	98 bp distal