rs27600862 SNP Detail

Summary

• ID
  rs27600862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172125607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCATGA CTCACTGGAA
  CAGTCGTGAG GGGCGGGAGG TGAAAGGTGT GAAGCCTGGG TCGGTCATGC TTTACCCACA
  CAGTCCCCAT CCAGGACCGT GGGCTACATA CACCCTCGAT TTCTGATCAG GAGTTCAGGA
  AGTCACTAGA GTCACTCACG AGAGCCGGGC ACAGAGGCCC CCTTGCTGCA AGTTGCCATG
  Y
  GGAGGTGGCC CTTGTTGAAG AATGAGTCGC ATCCCCATGC TCAAACGCTT GTGAAGTGAC
  TCCACTGTGC ATGGTTCTAT GGGACAACGG AGAGGCACGG CTGCCAGGAA GCTTCAGACA
  AGAAAGTCAC ATTTATATCT GTGTCCATCC AACTTGGTGT TTCCAATAAA ATCTCATTCC
  AGTAGACCTC CCCCACTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37809481	NES08705396	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27600862					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809481	NES08705396	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172125607 () rs orientation: forward

Symbol	Name	Function Class
Gm40008	predicted gene, 40008	1786 bp downstream
Gm74903	predicted gene, 74903	1090 bp upstream
Rr571639	regulatory region 571639	1101 bp distal
Rr571640	regulatory region 571640	907 bp distal