rs27600605 SNP Detail

Summary

• ID
  rs27600605
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144038515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCAACTTC CCTAAGGCCT GGGAACTAGA ACTTCCACCC
  TATCATTAAA ATGGAGTCTT CAAACAAAAT GATAATATTT AAAACAAGTT TCCTTTGCTT
  K
  TTCCCAACAT TTAGATTAAT AATAATTTAT CTGCTATCAT ATTGCTCAAT AAAAGCATAA
  GACATAACAT TTTTTAGAAA AGAAATAAAA CCAAAGCCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ
ss37801524	NES09114264	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ
rs27600605					SNP	T	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37801524	NES09114264	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144038515 () rs orientation: forward

Symbol	Name	Function Class
Rr377339	regulatory region 377339	455 bp upstream
Rr604223	regulatory region 604223	1644 bp distal
Rr604224	regulatory region 604224	1350 bp distal