rs27599867 SNP Detail

Summary

• ID
  rs27599867
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148547471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGTCCT GAGCTGTGTC
  AAGAAGGAGA AGGAACGGAC TGCGGCGTTC CAGGCCCTGG GGCTGCTTTC TGTGGCCGTG
  AGGTCGGAGT TTAAGGTCTA CTTGCCCCGT GTACTTGACA TCATCCGAGC AGCGCTTCCT
  CCAAAGGACT TTGCCCACAA GTAAGCACCT CCGATAGGAT TTCTCCGTCT GAGCGGTTCC
  K
  AGGTGGAGAG ACTCACAGCT TACGCCCATT CCACACATTG TTACCTCTGA GGCACGCCAG
  GTGGAGGACA GTCCCTCCTC ACTGAGTTCA AGCTCTTTAG AAAGGTAGAA ACCTTGATGT
  TGGAGACCAC AGCGTTCTCC TGCCTGACTG TTCTCGGGCG TTCAAGTCTT CTGCTGACAG
  AATGCTTGTG GAGGAATCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37803688	NES09117054	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27599867					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803688	NES09117054	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148547471 () rs orientation: forward

Symbol	Name	Function Class
Mtor	mechanistic target of rapamycin kinase	Intron
Rr604688	regulatory region 604688	1590 bp distal
Rr604689	regulatory region 604689	1031 bp distal
Rr604690	regulatory region 604690	within coordinates
Rr604691	regulatory region 604691	50 bp proximal
Rr604692	regulatory region 604692	472 bp proximal