rs27599557 SNP Detail

Summary

• ID
  rs27599557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148377744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTCCTT TTGTATCTGG
  CCTCTTGTTC CTGCTTGCCA AGTGAGAACA CCAAAATAGA TGCACTCAGA GGTGCCCTGA
  TGGAATCTCC CAGGAAAGCG TGGGAGGAAG GAAGGATGGA TGTGCAATGG GCTCACAGCA
  TCAGAGGAAT AGGGAAGCTC TAATTTCCAA AGGGCAAATG GCAGGGGTAG CTAAATGCAG
  Y
  GCAATGGCCC AGAGAACATG AAATTAAGCA CACAACTCTC CCAGCAAATG CACACACCCT
  TGTTTTATAC GAGAGCAAAA GAAACCACAC ACCTCTTTAT CAAGATAGGA AATAAAAATT
  ATCTCCTGGT CTAGAAATCC TGAGAGAGGC TATTGAGGAA TCCATAGACA GAGGCCAGCC
  TAGGGGCTGT TTCAGCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804682	NES09104190	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss148000467	ENSMUSSNP4220304	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27599557					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804682	NES09104190	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148377744 () rs orientation: forward

Symbol	Name	Function Class
Rr604646	regulatory region 604646	1854 bp distal
Rr604647	regulatory region 604647	819 bp distal
Rr604648	regulatory region 604648	101 bp proximal