rs27599016 SNP Detail

Summary

• ID
  rs27599016
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138667858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCACTC TGTAGACCAG
  GCTGGCCTTG AACTCAGAAA GCTGCCTGCT TCTGCCTCCC AAGTGCTAGG ATTAAAGGAG
  TGCCTCACCA CTGTTTAGCA AGTCTTCCTC TCTTTAACTT GTTTGCCTTG GGTATTTTAT
  CAGAGCCGCT GAAAGCTAAC TCAGGGATTC CATTTAAAGG GGGCCAAGGA GATTCCTCAA
  S
  CAAAAAGTTT CAGGAGACAC TGTAAGATGC ATGTGTCCCA CATGCCCCTC TGCAACTCAA
  CCATGCGCTC ATGGAGCTTG GTTAATTTTG CTTCCTGCCC CTTCTTTTCG CGTTGCCAGT
  GGCCTCTCTT GATCACAAAA CATCCAGTGA AAGCAATGCT TGTTCCCTGG AATTCAATTG
  GGGACATTGA GGCACATAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37766350	NES09144186	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	G	C	C	C		C	C	C	C		G
ss321378247	CHEV_4_138496462	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27599016					SNP	C	C	G	C	C	G	G	C	C	C	G	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766350	NES09144186	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138667858 () rs orientation: forward

Symbol	Name	Function Class
Gm33011	predicted gene, 33011	1939 bp upstream
Rr603050	regulatory region 603050	1424 bp distal
Rr603051	regulatory region 603051	929 bp proximal
Rr603052	regulatory region 603052	1415 bp proximal
Tssr44194	transcription start site region 44194	1916 bp upstream