rs27599010 SNP Detail

Summary

• ID
  rs27599010
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138669415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATTTTT GGAGACTCCT
  GAAACCATAC ATACAGTGGC TTCAGATTCC TGGCCACGGT ATTTTATTTT ATAGGTAGAA
  AAGCAGGCTA AAACACTGCC CTGTGACACC CAAGCAAGGC CTCCTGGACC CATGCAGGGA
  TCAAGTTTCT CCGTCCCTCC CCCCACCTCC CCAGGCTTCA GCAAACAAGA CAACACCTGC
  S
  TTCTCTTTGC TGCCAAAATG CAGTGTGAGA CTCTTATGAA CTATTAAACG GAATCCACCC
  ATACAGATCA AATTCAAGGC AACAGGATGG AGACATTCTG CGGCTCAAAG TTAGTGTTTA
  TGTAGTGGGT GTGTGCCGAG CTCCCTCACC ATCAGACAGA AAATGTTCCG TCTCAGTCGT
  GAGCCCCACC TCCCTGGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37766344	NES09144164	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	C	C	C		C	C	C		G
ss321378263	CHEV_4_138498019	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27599010					SNP	C	C	G	C	C	G	C	C	C	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766344	NES09144164	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138669415 () rs orientation: forward

Symbol	Name	Function Class
Rr398631	regulatory region 398631	1644 bp upstream
Rr603051	regulatory region 603051	284 bp distal
Rr603052	regulatory region 603052	within coordinates
Rr603053	regulatory region 603053	1473 bp proximal
Rr603054	regulatory region 603054	1804 bp proximal