rs27599005 SNP Detail

Summary

• ID
  rs27599005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138670085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTCATGT CCCAGCTCCC
  AAACAGCATC TCTGTCCTGT GCCTCCATGC ATCCTGGGAA ACTCTGTCAA AATCCTTCTC
  TTAGCCAGGT AGGTAGAGAG CCCTGGAATC CCACTGTTAG GCTGAGACAG GGACAAAGAT
  CAGCCTGGCC AGGGTCGGAA AGACCCAAAC TCCTGCTTGC TACAGCCCTT TACCCAGATG
  R
  CACCAAGTCC TGGTGGTACC AGCCCCCTTC CTGAAAGAAT TCCATGTGCT CAAACCAGTA
  CTGTATATGG AGAAAAACCA GTTCTTCGCC TGATTTGCCT GGGACTATAA GAACCTAGCA
  AGCAGCTTGG GTCCCGAGCT CTTCTCTACC CCCAGCCCTG GGAAGGGTGA ACCTCGCCTG
  AAAGCTTGCC AATAAAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37766339	NES09144169	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27599005					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766339	NES09144169	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138670085 () rs orientation: forward

Symbol	Name	Function Class
Rr398631	regulatory region 398631	974 bp upstream
Rr603051	regulatory region 603051	954 bp distal
Rr603052	regulatory region 603052	386 bp distal
Rr603053	regulatory region 603053	803 bp proximal
Rr603054	regulatory region 603054	1134 bp proximal